PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014726m
Common NameEUTSA_v10014726mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 21869 Da    PI: 7.7228
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014726mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.71.7e-24959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienks rqvtfskRrng++ KA  LSvLCda va++++s +gkly +ss
  Thhalv10014726m  9 KRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSS 59
                     79***********************************************96 PP

2K-box37.78.7e-14941652899
            K-box  28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       e L+    +l+  ++++ s+  L qLe++Le++l+  R++K+el+l+ ++ l++kek l++en+ L +++e
  Thhalv10014726m  94 HELLELVESQLVDSSVDNASVDSLAQLEDHLETALSVTRARKTELMLKLVDSLKEKEKLLKRENQVLASQME 165
                      5667766778888999999************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-35160IPR002100Transcription factor, MADS-box
CDDcd002652.32E-37278No hitNo description
SuperFamilySSF554553.14E-28277IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.33380170IPR002487Transcription factor, K-box
PfamPF014865.0E-1089164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0042752Biological Processregulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0043234Cellular Componentprotein complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG  60
DNLVKILDRY GKQHADDLKA LDLQSKALSY GSHHELLELV ESQLVDSSVD NASVDSLAQL  120
EDHLETALSV TRARKTELML KLVDSLKEKE KLLKRENQVL ASQMEKNQHV GAEADNMEMS  180
PGQISDSNLP VTLPLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D3e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C3e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B3e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A3e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J4e-17270168Myocyte-specific enhancer factor 2A
3p57_I4e-17270168Myocyte-specific enhancer factor 2A
3p57_D4e-17270168Myocyte-specific enhancer factor 2A
3p57_C4e-17270168Myocyte-specific enhancer factor 2A
3p57_B4e-17270168Myocyte-specific enhancer factor 2A
3p57_A4e-17270168Myocyte-specific enhancer factor 2A
3kov_J4e-17270168Myocyte-specific enhancer factor 2A
3kov_I4e-17270168Myocyte-specific enhancer factor 2A
3kov_B4e-17270168Myocyte-specific enhancer factor 2A
3kov_A4e-17270168Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00079ChIP-seqTransfer from AT5G10140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9575370.0AY957537.1 Thellungiella halophila flowering locus C (FLC) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399505.11e-139hypothetical protein EUTSA_v10014726mg
SwissprotQ9S7Q71e-111FLC_ARATH; MADS-box protein FLOWERING LOCUS C
TrEMBLQ1XA001e-139Q1XA00_EUTHA; Flowering locus C
TrEMBLV4LM941e-139V4LM94_EUTSA; Uncharacterized protein
STRINGBra028599.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM9861987
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.11e-102MIKC_MADS family protein